Index

_

__getitem__() (phenonn.data.dataset.PhenoCamDataset method) (phenonn.data.dataset_flat.LAIDataset method) __init__() (phenonn.BiTransformer method) (phenonn.CombinedModel method) (phenonn.data.BigLAIDataset method) (phenonn.data.LAIDataset method) (phenonn.data.PhenoCamDataset method) (phenonn.EncoderTorch method) (phenonn.LAIDataset method) (phenonn.models.BiTransformer method) (phenonn.models.CombinedModel method) (phenonn.models.EncoderTorch method) (phenonn.models.FCN method) (phenonn.models.fcn.FCBlock method) (phenonn.models.fcn.FCN method) (phenonn.models.linear_baseline.LinearBaseline method) (phenonn.models.linear_baseline.PerDayLinearBaseline method) (phenonn.models.LinearBaseline method) (phenonn.models.PerDayLinearBaseline method) (phenonn.models.rnn.BaseRNN method) (phenonn.models.rnn.RNN_GRU method) (phenonn.models.rnn.RNN_LSTM method) (phenonn.models.RNN_GRU method) (phenonn.models.RNN_LSTM method) (phenonn.models.transformer.EncoderTorch method) (phenonn.models.transformerbis.BiTransformer method) (phenonn.models.transformerbis.CombinedModel method) (phenonn.models.transformerbis.PositionalEncoding method) (phenonn.PhenoCamDataset method) (phenonn.RNN_GRU method) (phenonn.RNN_LSTM method) (phenonn.utils.evaluater.GradientAwareLoss method) (phenonn.utils.evaluater.MetricTracker method) (phenonn.utils.evaluater.NMAELoss method) (phenonn.utils.evaluater.NMSELoss method) (phenonn.utils.Every10DaysWrapper method) (phenonn.utils.FileUtils method) (phenonn.utils.LastNDaysWrapper method) (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) (phenonn.utils.model_utils.ModelUtils method) (phenonn.utils.ModelUtils method) (phenonn.utils.permuteWrapper method) (phenonn.utils.wrappers.Every10DaysWrapper method) (phenonn.utils.wrappers.LastNDaysWrapper method) (phenonn.utils.wrappers.permuteWrapper method) (phenonn.utils.wrappers.SingleDayWrapper method)

__len__() (phenonn.data.dataset.PhenoCamDataset method) (phenonn.data.dataset_flat.LAIDataset method)

A

add_derived_features() (in module phenonn) (in module phenonn.data) (in module phenonn.data.feature_engineering)

B

BaseRNN (class in phenonn.models.rnn) BigLAIDataset (class in phenonn.data) BiTransformer (class in phenonn) (class in phenonn.models) (class in phenonn.models.transformerbis)

bn (phenonn.models.fcn.FCBlock attribute) build_model() (in module phenonn.training.train_flat)

C

clear_logs() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) CombinedModel (class in phenonn) (class in phenonn.models) (class in phenonn.models.transformerbis)

compute_norm_stats() (in module phenonn.data.dataset) (in module phenonn.data.dataset_flat) count (phenonn.utils.evaluater.MetricTracker attribute) count_parameters_by_layer() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method)

D

dim_change (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute)

dim_expand (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute) dropout (phenonn.models.transformerbis.PositionalEncoding attribute)

E

EasyDict (class in phenonn.utils) encoder (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute) EncoderTorch (class in phenonn) (class in phenonn.models) (class in phenonn.models.transformer)

error() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) Every10DaysWrapper (class in phenonn.utils) (class in phenonn.utils.wrappers) exception() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) extract_pft_and_site() (in module phenonn) (in module phenonn.data) (in module phenonn.data.dataset)

F

FCBlock (class in phenonn.models.fcn) FCN (class in phenonn.models) (class in phenonn.models.fcn) feature_channel (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute) feature_channels (phenonn.data.BigLAIDataset property) (phenonn.data.dataset.PhenoCamDataset property) (phenonn.data.dataset_flat.LAIDataset property) (phenonn.data.LAIDataset property) (phenonn.data.PhenoCamDataset property) (phenonn.LAIDataset property) (phenonn.PhenoCamDataset property) FileUtils (class in phenonn.utils) final (phenonn.models.rnn.BaseRNN attribute) forward() (phenonn.BiTransformer method) (phenonn.CombinedModel method) (phenonn.EncoderTorch method) (phenonn.models.BiTransformer method) (phenonn.models.CombinedModel method) (phenonn.models.EncoderTorch method) (phenonn.models.FCN method) (phenonn.models.fcn.FCBlock method) (phenonn.models.fcn.FCN method) (phenonn.models.linear_baseline.LinearBaseline method) (phenonn.models.linear_baseline.PerDayLinearBaseline method) (phenonn.models.LinearBaseline method) (phenonn.models.PerDayLinearBaseline method) (phenonn.models.rnn.BaseRNN method) (phenonn.models.transformer.EncoderTorch method) (phenonn.models.transformerbis.BiTransformer method) (phenonn.models.transformerbis.CombinedModel method) (phenonn.models.transformerbis.PositionalEncoding method) (phenonn.utils.evaluater.GradientAwareLoss method) (phenonn.utils.evaluater.NMAELoss method) (phenonn.utils.evaluater.NMSELoss method) (phenonn.utils.Every10DaysWrapper method) (phenonn.utils.LastNDaysWrapper method) (phenonn.utils.permuteWrapper method) (phenonn.utils.wrappers.Every10DaysWrapper method) (phenonn.utils.wrappers.LastNDaysWrapper method) (phenonn.utils.wrappers.permuteWrapper method) (phenonn.utils.wrappers.SingleDayWrapper method)

forward_from_stress() (phenonn.CombinedModel method) (phenonn.models.CombinedModel method) (phenonn.models.transformerbis.CombinedModel method)

G

generate_site_ids_from_range() (in module phenonn.data) get_loss_function() (in module phenonn.utils) (in module phenonn.utils.evaluater) get_parameter_number() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) get_pixel_index() (in module phenonn.data) get_site_ids() (in module phenonn) (in module phenonn.data) (in module phenonn.data.dataset_flat) get_site_info() (phenonn.data.BigLAIDataset method) (phenonn.data.dataset.PhenoCamDataset method) (phenonn.data.dataset_flat.LAIDataset method) (phenonn.data.LAIDataset method) (phenonn.data.PhenoCamDataset method) (phenonn.LAIDataset method) (phenonn.PhenoCamDataset method)

get_version() (in module phenonn) (in module phenonn.version) get_versions() (in module phenonn) (in module phenonn.version) getmean() (phenonn.utils.evaluater.MetricTracker method) getsqrtmean() (phenonn.utils.evaluater.MetricTracker method) getstd() (phenonn.utils.evaluater.MetricTracker method) gmrae_all() (in module phenonn.utils.evaluater) GradientAwareLoss (class in phenonn.utils.evaluater)

H

hidden_layers (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute)

hidden_size (phenonn.models.rnn.BaseRNN attribute)

I

info() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method)

init_hidden() (phenonn.models.rnn.BaseRNN method) input_layer (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute)

L

LAIDataset (class in phenonn) (class in phenonn.data) (class in phenonn.data.dataset_flat) LastNDaysWrapper (class in phenonn.utils) (class in phenonn.utils.wrappers) lin1 (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute) lin2 (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute) lin3 (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute) lin4 (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute)

linear (phenonn.models.fcn.FCBlock attribute) LinearBaseline (class in phenonn.models) (class in phenonn.models.linear_baseline) load_checkpoint() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) load_lai_norms() (in module phenonn.data) (in module phenonn.data.dataset) load_model() (in module phenonn.utils) (in module phenonn.utils.model_loader) load_norm_stats() (in module phenonn.data.dataset) (in module phenonn.data.dataset_flat) load_site() (in module phenonn.data) (in module phenonn.data.dataset) load_training_checkpoint() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) log_metrics() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) log_model_summary() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) Logger (class in phenonn.utils) (class in phenonn.utils.logger)

M

mae_all() (in module phenonn.utils.evaluater) main() (in module phenonn.cli) make_history_dicts() (in module phenonn.utils) (in module phenonn.utils.diagnostics) makedir() (phenonn.utils.FileUtils static method) makefile() (phenonn.utils.FileUtils static method) mare_all() (in module phenonn.utils.evaluater) mbe_all() (in module phenonn.utils.evaluater) MetricTracker (class in phenonn.utils.evaluater) ModelUtils (class in phenonn.utils) (class in phenonn.utils.model_utils) module phenonn phenonn.cli phenonn.data phenonn.data.dataset phenonn.data.dataset_flat phenonn.data.feature_engineering phenonn.models phenonn.models.fcn phenonn.models.linear_baseline phenonn.models.rnn phenonn.models.transformer phenonn.models.transformerbis phenonn.prediction phenonn.prediction.predict phenonn.prediction.predict_flat phenonn.training phenonn.training.train phenonn.training.train_flat phenonn.utils phenonn.utils.diagnostics phenonn.utils.evaluater phenonn.utils.logger phenonn.utils.model_loader phenonn.utils.model_utils phenonn.utils.wrappers phenonn.version

mse_all() (in module phenonn.utils.evaluater)

N

nmae_all() (in module phenonn.utils.evaluater) NMAELoss (class in phenonn.utils.evaluater)

nmse_all() (in module phenonn.utils.evaluater) NMSELoss (class in phenonn.utils.evaluater) num_layers (phenonn.models.rnn.BaseRNN attribute)

O

output_channel (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute) (phenonn.models.rnn.BaseRNN attribute)

output_layer (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute)

P

parse_args() (in module phenonn.prediction.predict) (in module phenonn.prediction.predict_flat) (in module phenonn.training.train) (in module phenonn.training.train_flat) parse_args_bis() (in module phenonn.training.train_flat) parse_year_list() (in module phenonn.training.train) (in module phenonn.training.train_flat) PerDayLinearBaseline (class in phenonn.models) (class in phenonn.models.linear_baseline) permuteWrapper (class in phenonn.utils) (class in phenonn.utils.wrappers) PhenoCamDataset (class in phenonn) (class in phenonn.data) (class in phenonn.data.dataset) phenonn module phenonn.cli module phenonn.data module phenonn.data.dataset module phenonn.data.dataset_flat module phenonn.data.feature_engineering module phenonn.models module phenonn.models.fcn module phenonn.models.linear_baseline module phenonn.models.rnn module phenonn.models.transformer module phenonn.models.transformerbis module phenonn.prediction module phenonn.prediction.predict module phenonn.prediction.predict_flat module

phenonn.training module phenonn.training.train module phenonn.training.train_flat module phenonn.utils module phenonn.utils.diagnostics module phenonn.utils.evaluater module phenonn.utils.logger module phenonn.utils.model_loader module phenonn.utils.model_utils module phenonn.utils.wrappers module phenonn.version module plot_feature_distributions() (in module phenonn.utils.diagnostics) plot_feature_distributions_per_site() (in module phenonn.utils.diagnostics) plot_gcc_curves() (in module phenonn.utils) (in module phenonn.utils.diagnostics) plot_gcc_curves_all() (in module phenonn.utils) (in module phenonn.utils.diagnostics) plot_loss_histories() (in module phenonn.utils) (in module phenonn.utils.diagnostics) plot_metric_histories() (in module phenonn.utils) (in module phenonn.utils.diagnostics) plot_pred_vs_obs() (in module phenonn.utils) (in module phenonn.utils.diagnostics) pos_encoding (phenonn.models.transformerbis.PositionalEncoding attribute) positional_encoder (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute) PositionalEncoding (class in phenonn.models.transformerbis) print_model_layers() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method)

R

r2_all() (in module phenonn.utils.evaluater) relu (phenonn.models.fcn.FCBlock attribute) resample() (phenonn.data.dataset.PhenoCamDataset method) (phenonn.data.PhenoCamDataset method) (phenonn.PhenoCamDataset method) reset() (phenonn.utils.evaluater.MetricTracker method) rnn (phenonn.models.rnn.BaseRNN attribute) RNN_GRU (class in phenonn) (class in phenonn.models) (class in phenonn.models.rnn) RNN_LSTM (class in phenonn) (class in phenonn.models) (class in phenonn.models.rnn)

run_prediction() (in module phenonn) (in module phenonn.prediction) (in module phenonn.prediction.predict) run_prediction_flat() (in module phenonn) (in module phenonn.prediction) (in module phenonn.prediction.predict_flat) run_training() (in module phenonn) (in module phenonn.training) (in module phenonn.training.train) run_training_big() (in module phenonn) (in module phenonn.training) run_training_flat() (in module phenonn) (in module phenonn.training) (in module phenonn.training.train_flat)

S

save_checkpoint() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) save_emergency_checkpoint() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) save_training_checkpoint() (phenonn.utils.model_utils.ModelUtils static method) (phenonn.utils.ModelUtils static method) seq_length (phenonn.models.FCN attribute) (phenonn.models.fcn.FCN attribute) show_header() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) SingleDayWrapper (class in phenonn.utils.wrappers) split_by_sites_years() (in module phenonn.data.dataset)

split_by_year() (in module phenonn.data.dataset) split_sites_by_fraction() (in module phenonn) (in module phenonn.data) (in module phenonn.data.dataset) (in module phenonn.data.dataset_flat) split_sites_flat() (in module phenonn) (in module phenonn.data) start_task() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) step() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method) success() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method)

T

train_one_epoch() (in module phenonn.training.train) (in module phenonn.training.train_flat) trans (phenonn.BiTransformer attribute) (phenonn.CombinedModel attribute) (phenonn.models.BiTransformer attribute) (phenonn.models.CombinedModel attribute) (phenonn.models.transformerbis.BiTransformer attribute) (phenonn.models.transformerbis.CombinedModel attribute)

U

update() (phenonn.utils.evaluater.MetricTracker method)

V

validate() (in module phenonn.training.train) (in module phenonn.training.train_flat)

value (phenonn.utils.evaluater.MetricTracker attribute)

W

warning() (phenonn.utils.Logger method) (phenonn.utils.logger.Logger method)